BtaEX6077582 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021318 | SCAMP5
Description
Bos taurus secretory carrier membrane protein 5 (SCAMP5), mRNA. [Source:RefSeq mRNA;Acc:NM_001166565]
Coordinates
chr21:34093332-34096873:-
Coord C1 exon
chr21:34096819-34096873
Coord A exon
chr21:34095938-34096066
Coord C2 exon
chr21:34093332-34093488
Length
129 bp
Sequences
Splice sites
3' ss Seq
GGAATGTGCCTCACCCGCAGAGA
3' ss Score
7.11
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
TTCGAGACAAAGAAGCGTGGACAGGCCGCTGGGCCAGCGGGTGCCATCATGTCAG
Seq A exon
AGAAAGTGAACAACTTCCCACCACTGCCCAAATTCATCCCGCTAAAGCCATGTTTCTACCAAGACTTTGAGGCTGACATCCCTCCTCAGCATCTCAGCATGACCAAGCGCCTCTACTACCTCTGGATGC
Seq C2 exon
TGAATAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTCGCCTTTCTCTGGCTCATCCTCTTCACACCCTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021318-'3-3,'3-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACAAAGAAGCGTGGACA
R:
TTGAAGGCCTTGTAAATGGGC
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]