HsaEX6075840 @ hg19
Exon Skipping
Gene
ENSG00000198794 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:30386]
Coordinates
chr15:75304133-75309090:+
Coord C1 exon
chr15:75304133-75304187
Coord A exon
chr15:75305018-75305146
Coord C2 exon
chr15:75308934-75309090
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCAATGTGTCTCATCCACAGAGA
3' ss Score
8.23
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
TTCAGGACAAAGAGGTGTGGGCAGGCCACTGGGCCAGCTGGTAACATCATGGCAG
Seq A exon
AGAAAGTGAACAACTTCCCACCATTGCCCAAATTCATCCCGCTGAAGCCATGTTTCTACCAAGACTTCGAGGCAGATATTCCTCCCCAGCATGTCAGCATGACCAAGCGCCTCTACTACCTCTGGATGT
Seq C2 exon
TGAACAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTCGCCTTTCTCTGGCTCATCCTCTTCACACCCTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198794-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=PD(53.3=96.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACAAAGAGGTGTGGGC
R:
TTGAAGGCCTTGTAAATGGGC
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)