GgaEX6007303 @ galGal4
Exon Skipping
Gene
ENSGALG00000014116 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
Coordinates
chr10:1882597-1883812:-
Coord C1 exon
chr10:1883740-1883812
Coord A exon
chr10:1883528-1883656
Coord C2 exon
chr10:1882597-1882753
Length
129 bp
Sequences
Splice sites
3' ss Seq
AACGGGACTTCTTGTTGCAGAAA
3' ss Score
6.86
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
CTCTGACGCAGCTCCCGGCTGCTTTCCCTCATCTCTGCAGAGCGGGGAGGCTGACAGTGTGCCAGCATGGCAG
Seq A exon
AAAAAGCCAACAACTTCCCTCCGCTGCCCCGCTTCATCCCCCTGAAGCCATGTTTCTACCAGGACTTCGAGGCTGAGATCCCGCCGCAGCACCGCACCATGGCCAAGCGGCTCTACTACCTCTGGATGC
Seq C2 exon
TGAACAGCATCACCTTGGCGGTGAATCTCGTTGGCTGCCTCGCATGGCTGATTGGAGGCGGCGGAGCTGTTAATTTGGGACTGGCAATTCTCTGGCTCATTCTCTTTACGCCCTGCTCCTATGTCTGCTGGTTTAGACCTATTTACAAAGCTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014116-'10-5,'10-3,11-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACGCAGCTCCCGG
R:
GTCTAAACCAGCAGACATAGGAGC
Band lengths:
211-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]