HsaEX6075840 @ hg38
Exon Skipping
Gene
ENSG00000198794 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
Coordinates
chr15:75011792-75016749:+
Coord C1 exon
chr15:75011792-75011846
Coord A exon
chr15:75012677-75012805
Coord C2 exon
chr15:75016593-75016749
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCAATGTGTCTCATCCACAGAGA
3' ss Score
8.23
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
TTCAGGACAAAGAGGTGTGGGCAGGCCACTGGGCCAGCTGGTAACATCATGGCAG
Seq A exon
AGAAAGTGAACAACTTCCCACCATTGCCCAAATTCATCCCGCTGAAGCCATGTTTCTACCAAGACTTCGAGGCAGATATTCCTCCCCAGCATGTCAGCATGACCAAGCGCCTCTACTACCTCTGGATGT
Seq C2 exon
TGAACAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTCGCCTTTCTCTGGCTCATCCTCTTCACACCCTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198794-'19-30,'19-25,21-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=PD(34.8=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACAAAGAGGTGTGGGC
R:
TTGAAGGCCTTGTAAATGGGC
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains