RnoEX0078308 @ rn6
Exon Skipping
Gene
ENSRNOG00000054008 | Scamp5
Description
secretory carrier membrane protein 5 [Source:RGD Symbol;Acc:68356]
Coordinates
chr8:62226163-62231164:-
Coord C1 exon
chr8:62231110-62231164
Coord A exon
chr8:62230115-62230243
Coord C2 exon
chr8:62226163-62226319
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTATCTCATCCACAGAGA
3' ss Score
9.62
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GTCAGGACAAAGAGTTGTGAGCAGGCTTCCTGAGCTGGCTGGTCCATCATGGCAG
Seq A exon
AGAAAGTGAACAACTTCCCACCATTGCCCAAATTCATCCCCCTGAAGCCATGTTTCTACCAAGACTTCGAGGCAGACATCCCTCCTCAGCATCTCAGCTTAACCAAGCGCCTCTACTACCTCTGGATGT
Seq C2 exon
TGAACAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTGGCCTTTCTCTGGCTCATCCTCTTCACACCTTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054008-'11-12,'11-8,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTGTGAGCAGGCTTCCT
R:
TTGAAGGCCTTGTAAATGGGC
Band lengths:
202-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]