DreEX0064351 @ danRer10
Exon Skipping
Gene
ENSDARG00000018743 | scamp5a
Description
secretory carrier membrane protein 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3188]
Coordinates
chr25:31443988-31448668:-
Coord C1 exon
chr25:31448618-31448668
Coord A exon
chr25:31445619-31445738
Coord C2 exon
chr25:31443988-31444144
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTTCCCTACAGAAA
3' ss Score
12.48
5' ss Seq
TACGTATGT
5' ss Score
5.54
Exon sequences
Seq C1 exon
GTTTCTAAACAGTAAAGTTTGACGGTGATCTGAAAAGAATCTCCATGGCAG
Seq A exon
AAAACAATTTCCCTCCTCTACCACGGTTCATTCCACTGAAGCCATGTTTTTACCAAGACTTCAACGAAATCCCAGACCAGCATCGTACAATGTGCAAACGACTGTATTACCTGTGGATAC
Seq C2 exon
TGAACAGTGCCACTCTAGCAGTGAACCTGATTGGCTGTCTAGCATGGATGTGCGGAGGAGGCGGAGCAACCAATTTTGGCATGGCTATTCTGTGGCTGATCCTGTTCACCCCTTGTTCATACGTGTGCTGGTTTAGGCCCATCTACAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018743-'5-3,'5-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(0.6=33.3)
A:
PF041448=SCAMP=FE(22.7=100)
C2:
PF041448=SCAMP=FE(29.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGTAAAGTTTGACGGTGATCTG
R:
TTGAAGGCCTTGTAGATGGGC
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]