DreEX0065562 @ danRer10
Exon Skipping
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22104497-22105707:-
Coord C1 exon
chr16:22105475-22105707
Coord A exon
chr16:22104616-22104776
Coord C2 exon
chr16:22104497-22104540
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGCTTGCTTTAAGGTC
3' ss Score
8.75
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
TGCATGGAAGTGGATGCAGGTTTAAACTCAGGGATGGAGATGGAGCTGGAACCAGAGTTGGAGGAGGAGTTAGGAGTGTCTTTGGATGAGCTGCGCAAGTGGATCGAGGAGCAGGTGGACAGCAGCGAGGCTGTGCAGAAGAGGAAAGCTGATCTGGAGCAGCTGCAGGAGTGGGTTGAGCAGCGTGAGAAGGAGGTTGCTGATATCGATGCTCTTTGCTCCAATGCCTCAGA
Seq A exon
GTCTGTGGTTCAGTGTGAAGCTCTGGTGAAGGAAGTGTACAGTAACATGGGTTTAGTGTATCGTGAAAGCAGCTCAGATGATGAGGGAGGCAAGGCAAACCCTTCTGAGGTCATTGAGATCGATGATGATGATGACGATGATGTCATTGCTGTGGGATGTT
Seq C2 exon
TGGTTCCTCCCAAGAAGAGTTTAACTCAAGCCAAGGACCCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.508 C2=0.533
Domain overlap (PFAM):
C1:
PF135141=AAA_27=PU(76.3=96.1),PF051497=Flagellar_rod=PU(73.6=83.1),PF141821=YgaB=PU(83.1=76.6),PF092786=MerR-DNA-bind=WD(100=68.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGATGGAGATGGAGCTG
R:
CTGGGTCCTTGGCTTGAGTTA
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]