GgaEX1004446 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1732331-1733963:+
Coord C1 exon
chr25:1732331-1732394
Coord A exon
chr25:1733266-1733438
Coord C2 exon
chr25:1733926-1733963
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTTCCCACCCCAGAGA
3' ss Score
9.25
5' ss Seq
ACAGTTCAG
5' ss Score
-14.74
Exon sequences
Seq C1 exon
CCCCCGGCCCCTTCCTCAGCCTCCATCCCGGCTGTAGGGGTCGGGGCTGGGCCGTGGGGCCGAG
Seq A exon
AGACTTTGATAAATGTGAGATGTTGGTAAAGGATCTGTACTCCAAGCTGGGCCTCGAGTACCGTGAGAGCAGCTCTGAGGAGGAGGACTTGGCTGCCAAACCCACAGAAGTGATTGAGATCCCGGATGACGACGACGACGACGTCATGAGTATCGATTTGGGATGGAAGAACA
Seq C2 exon
GTGATACCAGTCCCAAAGTCGCCAAGGATCAGACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051_MULTIEX2-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.547 C2=0.933
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCTCAGCCTCCATCCC
R:
AGAGTCTGATCCTTGGCGACT
Band lengths:
92-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]