MmuEX0041861 @ mm9
Exon Skipping
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95153761-95160124:-
Coord C1 exon
chr3:95159856-95160124
Coord A exon
chr3:95158464-95158615
Coord C2 exon
chr3:95153761-95153795
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGCATGTGTTCCAATATCAGGGA
3' ss Score
6.72
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGCCAAAGCATGTCCTCCCTCCCTGGGTGCATGAGTTTGGCTGCAGCGCCAGCTGCAGCTGACTCTGCAGAGATTGCTGAGCTGCAGCAGGCGGTGGTTGAAGAGCTGGGTATCTCTATGGAGGAACTTCGTCAGTACATTGATGAGGAACTGGAAAAGATGGACTGCATACAGCAGCGCAAGAAGCAGCTCGCAGAGCTGGAGACGTGGGTACTACAGAAAGAGTCTGAAGTGGCTTATGTTGATCGGCTGTTTGATGATGCATCCAG
Seq A exon
GGAAGTGACTAACTGTGAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGACTACAGTATCATGACAGTAGCTCTGAGGATGAAGCTTCCCGGCCCACAGAGATCATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
Seq C2 exon
GTGATGCTGGGAGCAGAACTCCAAAAGACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-'3-4,'3-1,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.462 C2=1.000
Domain overlap (PFAM):
C1:
PF114733=B2=WD(100=71.3),PF072276=DUF1423=PU(68.4=89.7)
A:
PF072276=DUF1423=PD(30.7=67.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGACTCTGCAGAGATTG
R:
TCTGGTCTTTTGGAGTTCTGCT
Band lengths:
247-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: