HsaEX6033427 @ hg19
Exon Skipping
Gene
ENSG00000143379 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:10761]
Coordinates
chr1:150900180-150912450:+
Coord C1 exon
chr1:150900180-150900450
Coord A exon
chr1:150902443-150902594
Coord C2 exon
chr1:150912416-150912450
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGCATGTGTTCCAATATTAGGGC
3' ss Score
7.16
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGGACAAAAGCATGTCTTCCCTTCCTGGGTGCATTGGTTTGGATGCAGCAACAGCTACAGTGGAGTCTGAAGAGATTGCAGAGCTGCAACAGGCAGTGGTTGAGGAACTGGGTATCTCTATGGAGGAACTTCGGCATTTCATCGATGAGGAACTGGAGAAGATGGATTGTGTACAGCAACGCAAGAAGCAGCTAGCAGAGTTAGAGACATGGGTAATACAGAAAGAATCTGAGGTGGCTCACGTTGACCAACTCTTTGATGATGCATCCAG
Seq A exon
GGCAGTGACTAATTGTGAGTCTTTGGTGAAGGACTTCTACTCCAAGCTGGGACTACAATACCGGGACAGTAGCTCTGAGGACGAATCTTCCCGGCCTACAGAAATAATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
Seq C2 exon
GTGATGCTGGGAGCAGAACTCCAAAAGACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143379-'8-10,'8-9,13-10=AN
Average complexity
A_S
Mappability confidence:
90%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.511 C2=1.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(54.5=52.7),PF094815=CRISPR_Cse1=PU(52.4=47.3)
A:
PF058917=Methyltransf_PK=PD(44.3=75.0),PF094815=CRISPR_Cse1=PD(47.0=75.0)
C2:
PF094815=CRISPR_Cse1=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAACAGCTACAGTGGAG
R:
TGGTCTTTTGGAGTTCTGCTC
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)