DreEX0065736 @ danRer10
Exon Skipping
Gene
ENSDARG00000103595 | sfxn5a
Description
sideroflexin 5a [Source:ZFIN;Acc:ZDB-GENE-090312-174]
Coordinates
chr13:14889830-14916040:-
Coord C1 exon
chr13:14915955-14916040
Coord A exon
chr13:14904911-14905028
Coord C2 exon
chr13:14889830-14890289
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGTGTACGTCAGGCT
3' ss Score
5.92
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTTGATAGAGACGTCCCTGACCCGTGTGGTGCTGCCCATGCCTGTTCTCCTGCTGCCGCCATTAGTGATGTCACTGCTGGAGAG
Seq A exon
GCTTCCTTTCCTGCAGAAACGTCCTCGTGTTACACTGCCGGTTCACAGCATGGTGTGTCTCTGTGCATTCGGCCTGGCGCTGCCTGTTGCCATCAGCCTGTTCCCCCAAAACAGTCAG
Seq C2 exon
ATTCACGTATCGGAGCTGGAGCCGGAGATCTCTGCTGCTACACACTGCCAGATCCTAACCTACAACAAGGGTCTTTAACCAGTTAAAATGCTGGACATCTGCCAACTAATGTATTTTTCCCTGATGGTAAAATGCAAAGTGTTATTACAGTGTTTGATTGCTTCTTGCTGGATTGTTCCTGCTGTGCGTGAATCCTCTCTCAGCCTCACAAAGAGACTCACACCACTGCTAATCATAGGATTTCCATGTACTTGGCAAATAGAGGCTTTTAGTGTATTTAGAGCAAAAAAGGTTTATTTTTTTAATTTCCCCATTATTCTTTTATATTTGCTAATTTATGTACTATTGATAATAATAATAATTGTGTAAAAATGTTTGGATATCTTAAGCACATTTAATTAATATTGTACACAGAATTTATCTGGCTTTATGTTATTTTCTTAAAGTACATTTACAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103595_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.4=100)
A:
PF0382012=Mtc=FE(12.6=100)
C2:
PF0382012=Mtc=PD(8.1=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCCTGTTCTCCTGCTG
R:
GAGAGAGGATTCACGCACAGC
Band lengths:
250-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]