DreEX0067419 @ danRer10
Exon Skipping
Gene
ENSDARG00000035796 | si:ch211-206i14.2
Description
si:ch211-206i14.2 [Source:ZFIN;Acc:ZDB-GENE-110407-4]
Coordinates
chr7:54886666-54896032:+
Coord C1 exon
chr7:54886666-54886878
Coord A exon
chr7:54891534-54891667
Coord C2 exon
chr7:54895889-54896032
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTATTCTTATTCAATCCCAGTAC
3' ss Score
6.14
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AAACTGGGATTCTGTTGACGCTTAATACTGTGTTGGAACCAGATGTTTACAATTTAGTCCTAATGGTTTATGATAACAACGAAAACCATAAAAACAGCTCCATTCAAGCAAGTGTATGTGACTGCAAAGGCAATGATATTGTGTGTGGAAGAATTGCAGTAATGCCACTCCATGGAGCTTTGGGAATTCTGGGAGGCTTCTTGGTCCTGCTAT
Seq A exon
TACTCCTTCTGCTGGTTCTACTGTTCATGAGGAGAAAACACAGAAGCATAAAGGAGCCACTCATTCCTGAAGATTATGAAATAAGAGACAACATCTACTGTTATGATGAGGAAGGCGGTGGAGAAGACGATCAG
Seq C2 exon
GACTTTGATTTGAGTGTGCTGCATCGAGGCCTGGACAACAGACCAAATGTGTACAGGAACGACATTTGTCCTATTTTTTTGTCAGCACCTCAGTATAGACCTCGACCAGCCAGTTCTGAGGACATCAGCACATTTGTTGATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035796-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
PF0104912=Cadherin_C=PU(22.8=75.6)
C2:
PF0104912=Cadherin_C=FE(31.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTCCATTCAAGCAAGTGT
R:
ATGTCCTCAGAACTGGCTGGT
Band lengths:
245-379
Functional annotations
There are 1 annotated functions for this event
PMID: 11076937
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cleavage reaction, confocal microscopy, edman degradation, western blot. ELM ID: ELMI001928; ELM sequence: DTRDN; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]