DreEX0068559 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35285820-35288378:+
Coord C1 exon
chr20:35285820-35286039
Coord A exon
chr20:35286119-35286181
Coord C2 exon
chr20:35288086-35288378
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTATTCACTCTCTGTTTAGATC
3' ss Score
9.4
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GTAACAGCATCTCAGCTGTCCGCCTCCTCCAGTCAGAAGACGTGTATTCTAATTCTGGCTGACAACGAGCAAGAAAGGACGAAGTGGGTGTGCGCTCTGAATGAACTGCATCGCATCCTGAGGAAAAACAAGCTGAAGGAGCGTTTCGTCTATGTGCCTAAAGAAGCCTACGACAGCACACTTCCTCTCATCAAAACCACCCAAACTGCTGCTATTATAG
Seq A exon
ATCATGAACGCGTTGCTTTGGGCAATGAGGAGGGCCTGTTTGTCATCCACGTCACCAAAGATG
Seq C2 exon
AAATCATTCGTGTGGGTGATGTCAAGAAGGTGCATCATGTAGAACTGATGCCCACGGAGCACATACTGGCCGTCATCTCGGGCAGGAACCGACAAGTATGTCTGGTCTCCATGGCGGGTCTCGACGGGAGGGAGGTCGACAAGAATAAGGTGGCAGATACTAAAAACTGCCAGTTGCTGGTGTCCGGTGTGGTTCGCAATGTCACCTGCTTCTGCCTCGCCATTAAACGGCAGATCTCATGCTTCGAAATTAACAAGAGCAAGTCACGACACTCCCATCTCGTGGACATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'33-35,'33-34,34-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(30.8=50.0),PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(8.0=100)
C2:
PF0078017=CNH=FE(36.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTTTCGTCTATGTGCCT
R:
TCCGTGGGCATCAGTTCTACA
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]