DreEX0073045 @ danRer10
Exon Skipping
Gene
ENSDARG00000028173 | slc4a2a
Description
solute carrier family 4 (anion exchanger), member 2a [Source:ZFIN;Acc:ZDB-GENE-051101-2]
Coordinates
chr2:32418874-32423853:-
Coord C1 exon
chr2:32423764-32423853
Coord A exon
chr2:32421246-32421412
Coord C2 exon
chr2:32418874-32419127
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTCTCTCCATATAGAAA
3' ss Score
9.69
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
CTGCGAAGGGCTATCGGAGATTTTGGAGTTCCTATTGCCATCTCCACCATGGTGTTATTGGACTACAGCATTAAGGACACTTACACACAG
Seq A exon
AAACTGAACGTGCCTGACGGCTTCTCGGTGACCAGCCCTGACAAGCGTGGTTGGTTTATACACCCGCTGGGCTCTGATGGTCAGTTCCCTATTTGGATGATGGGTGCCTGCATTTTACCAGCCTTGCTTGTCTACATCCTCATCTTCATGGAGACTCAGATCACCAC
Seq C2 exon
TTTGATAGTGAGTAAGAAGGAGAGGATGCTGGTGAAGGGTTCCGGATTTCACTTGGACCTGCTGATCATAGTGGTTTCTGGTGGGATTGCAGCTCTGTTTGGTCTGCCGTGGTTGACCGGTGCCACCGTTCGCTCTGTAACTCATGCAAACAGTCTGACGGTGATGAGCAAAGCCGTCGCACCTGGAGACAAACCACGCATTCAGGAAGTAAAAGAGCAGAGAGTCACTGGGTTTCTGGTGGCTCTTCTAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028173-'25-28,'25-27,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.8=100)
A:
PF0095516=HCO3_cotransp=FE(18.5=100)
C2:
PF0095516=HCO3_cotransp=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAAGGGCTATCGGAGATT
R:
GCTCATCACCGTCAGACTGTT
Band lengths:
258-425
Functional annotations
There are 1 annotated functions for this event
PMID: 10364201
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000605; ELM sequence: SNSSAR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]