DreEX0073494 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24285015-24304393:-
Coord C1 exon
chr14:24304322-24304393
Coord A exon
chr14:24294220-24294291
Coord C2 exon
chr14:24285015-24285086
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTCTTTTTTCTAGCAC
3' ss Score
9.58
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAACTGGACAGCAACCACATCAGCTGCATCGAAGATGGAGCCTTCCGAGCCCTGCGCGATTTGGAGATACT
Seq A exon
CACTCTCAACAACAACAATATCACCCTCATCCCACTGTCAAGCTTCAACCACATGCCAAAGCTGCGGACACT
Seq C2 exon
CCGTCTGGAGCAGAACATGATCAAGAACATCCCAGCAGGAGCCTTCTCCACATACAAGAAACTCAAGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268_MULTIEX1-4/6=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF133061=LRR_5=FE(17.8=100)
A:
PF133061=LRR_5=PD(16.3=88.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGGACAGCAACCACAT
R:
TTCTCTTGAGTTTCTTGTATGTGGA
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]