RnoEX6046880 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20357777-20383454:+
Coord C1 exon
chr10:20357777-20357848
Coord A exon
chr10:20377589-20377660
Coord C2 exon
chr10:20383291-20383454
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCTCTGTCTCTGCAGCAC
3' ss Score
10.95
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GCAACTGGACAATAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCGCTGCGCGATTTGGAGATCCT
Seq A exon
CACCCTTAACAACAACAACATCAGCCGTATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGGACCCT
Seq C2 exon
GCGTCTCCACTCCAACCACCTGTACTGTGATTGTCACTTGGCCTGGCTCTCAGACTGGCTGCGACAGCGGCGGACCATTGGCCAGTTCACCCTCTGCATGGCGCCCGTGCACCTGAGAGGCTTCAGTGTAGCAGACGTGCAGAAGAAGGAGTATGTGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCGATTTGGAGATCCT
R:
CTCCTTCTTCTGCACGTCTGC
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]