MmuEX6084758 @ mm9
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35358231-35384233:+
Coord C1 exon
chr11:35358231-35358302
Coord A exon
chr11:35378127-35378198
Coord C2 exon
chr11:35384070-35384233
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTTATTCTCTATCTCTACAGCAC
3' ss Score
8.87
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCAACTGGACAATAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCGCTGCGCGATTTGGAGATCCT
Seq A exon
CACCCTCAACAATAACAACATCAGCCGCATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGGACTCT
Seq C2 exon
GCGTCTACACTCCAACCACCTGTACTGTGACTGTCATTTGGCCTGGCTCTCAGATTGGCTGCGACAACGGCGGACCATTGGCCAGTTCACCCTCTGCATGGCACCTGTGCACCTGAGAGGCTTCAGTGTAGCAGATGTGCAGAAGAAAGAGTATGTGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0),PF127992=LRR_4=PU(10.6=20.0)
A:
PF127992=LRR_4=FE(51.1=100)
C2:
PF127992=LRR_4=PD(36.2=30.4),PF0146319=LRRCT=WD(100=46.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTGAAGATGGAGCCTTCC
R:
GCTACACTGAAGCCTCTCAGG
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: