GgaEX1053908 @ galGal3
Exon Skipping
Gene
ENSGALG00000001916 | Q90Z43_CHICK
Description
NA
Coordinates
chr13:4233742-4258963:+
Coord C1 exon
chr13:4233742-4233840
Coord A exon
chr13:4254421-4254494
Coord C2 exon
chr13:4258800-4258963
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTTTTTTCCCCAACAGT
3' ss Score
-1.72
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TCCCTCACCCTCTCCCTTCCTCTCCGCAGGCAGCTGGACAACAACCAGATCAGCTGCATCGAGGATGGAGCTTTCCGCGCCCTGCGCGACCTGGAGATC
Seq A exon
AGTACTCTCAACAACAACAACATCACCCGCATTCCTGTTACCAGTTTCAATCACATGCCAAAGATCAGGACTCT
Seq C2 exon
GCGGCTGCACTCCAACTTCCTGCACTGCGACTGCCACCTGGCCTGGCTGTCCGACTGGCTGCGGCAGCGACGCACCATCGGGCAGTTCACCTTCTGCCTGGCGCCGGTCAGCCTGCGGGGCTTCCTGGTGGCCGAGGTGCAGAAAAAGGACTTCGTCTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF138551=LRR_8=PU(69.7=95.8)
C2:
PF138551=LRR_8=PD(27.3=16.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAGCTGGACAACAACC
R:
CAGAAGGTGAACTGCCCGATG
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]