MmuEX6084758 @ mm10
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35544729-35570731:+
Coord C1 exon
chr11:35544729-35544800
Coord A exon
chr11:35564625-35564696
Coord C2 exon
chr11:35570568-35570731
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTTATTCTCTATCTCTACAGCAC
3' ss Score
8.87
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCAACTGGACAATAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCGCTGCGCGATTTGGAGATCCT
Seq A exon
CACCCTCAACAATAACAACATCAGCCGCATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGGACTCT
Seq C2 exon
GCGTCTACACTCCAACCACCTGTACTGTGACTGTCATTTGGCCTGGCTCTCAGATTGGCTGCGACAACGGCGGACCATTGGCCAGTTCACCCTCTGCATGGCACCTGTGCACCTGAGAGGCTTCAGTGTAGCAGATGTGCAGAAGAAAGAGTATGTGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'24-26,'24-23,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0),PF127992=LRR_4=PU(10.6=20.0)
A:
PF127992=LRR_4=FE(51.1=100)
C2:
PF127992=LRR_4=PD(36.2=30.4)
Main Skipping Isoform:
ENSMUST00000069837fB17068
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTGAAGATGGAGCCTTCC
R:
GCTACACTGAAGCCTCTCAGG
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types