GgaEX1053908 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3845436-3870625:+
Coord C1 exon
chr13:3845436-3845507
Coord A exon
chr13:3866085-3866156
Coord C2 exon
chr13:3870462-3870625
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTTTCCCCAACAGTAC
3' ss Score
9.97
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCAGCTGGACAACAACCAGATCAGCTGCATCGAGGATGGAGCTTTCCGCGCCCTGCGCGACCTGGAGATCCT
Seq A exon
TACTCTCAACAACAACAACATCACCCGCATTCCTGTTACCAGTTTCAATCACATGCCAAAGATCAGGACTCT
Seq C2 exon
GCGGCTGCACTCCAACTTCCTGCACTGCGACTGCCACCTGGCCTGGCTGTCCGACTGGCTGCGGCAGCGACGCACCATCGGGCAGTTCACCTTCTGCCTGGCGCCGGTCAGCCTGCGGGGCTTCCTGGTGGCCGAGGTGCAGAAAAAGGACTTCGTCTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'7-28,'7-26,9-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0),PF127992=LRR_4=PU(15.2=20.0)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAACAACCAGATCAGCTG
R:
GCCAGGCAGAAGGTGAACTG
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]