DreEX0075600 @ danRer10
Exon Skipping
Gene
ENSDARG00000057433 | st6galnac5b
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5b [Source:ZFIN;Acc:ZDB-GENE-040912-25]
Coordinates
chr8:17772500-17786547:-
Coord C1 exon
chr8:17786398-17786547
Coord A exon
chr8:17784973-17785149
Coord C2 exon
chr8:17772500-17772909
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTTCTTTTGTTTCAGCGT
3' ss Score
10.71
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AGTTCGGTGTGAAGATGACAGAGCGAGCAGAAGAAGAGCTGATGGAGGAAATACACTGTGCGTTTATAAAGCTGCTGTCTGTGAGGCTGAACAATTTGACTGCACGAAAAGACCCGAAATAAAACACTTCACAATATGAAGACGCGAACG
Seq A exon
CGTCATGGGATCATACTGATTGGTGTTGTGACTGTGCTTACAAGCTTATTGTTTGTCTACAACAGCACTTCTGCAGACACACCAGGGGATCAGCTGCATTCAGATGGACATCAGATAGATGCTGCAAGCCGACAGACATTCAGCTTAGAAGGTTACATCAGCATCATTGATCATAAG
Seq C2 exon
CCTCTCAAGACGCACTGCAGAAGTTGTGCCTTGGTGACGAGCTCTGGTCACATGACAGGAAGTGGTCGAGGTGCAGAGATCGACGAAACAGAGTGTGTCATTCGTATGAATGATGCCCCAACAAGAAGATACCAGAAGGATGTGGGCCAGCATACAAATCTCCGTGTGATTGCTCATTCCAGCATGCAGCGTGTGCTGCGAAACCGCTACGAGCTCCTCAACTCCAGCCAGGACACTTTCTTTATCTTCTGGGGGCCTGGAAACTACATGCGGAGAGACGGTAAAGGCCTTGTCTACAACAACCTGCGTCTGATGAAACAGTTGATGCCCAAACTTCAGGTGTACATCATCTCACGGCCGAAGATGCTGCAGTTTGATGAACTCTTCAAGAAGGAGACTGGAAAGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057433-'0-5,'0-0,1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.186 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(15.1=69.5)
C2:
PF0077713=Glyco_transf_29=FE(58.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGCTGCTGTCTGTGAGGC
R:
TTTGTATGCTGGCCCACATCC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]