GgaEX0013239 @ galGal3
Exon Skipping
Gene
ENSGALG00000009021 | Q6ZXY4_CHICK
Description
NA
Coordinates
chr8:19970028-20023086:-
Coord C1 exon
chr8:20023014-20023086
Coord A exon
chr8:20022017-20022250
Coord C2 exon
chr8:19970028-19970437
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTGCCCCCCGCAGCGC
3' ss Score
10.78
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCCCGCCATGCCGAGCCTAGCGGGGAGCGGGCGGAGCGGCGCCCGGGAGGCGCACAAAATGAAGACCCTGATG
Seq A exon
CGCCACGGGCTGGCCGTCTGCTTGGCGCTCACCACCATGTGCACCAGCTTGTTGCTCATGTACGGCGGCATCGGAGGCGGCGGCGGGGGCCACCCGGAGCCTCGGCGGCGGCAGCAGCAGCAGCAGCAGGTGGCGGCGGTGCCCAGCCGCCCTCCGGGACGCGGCCAGCACCGCCCAGCGCTCCCCGTCGGGGCCGGACTCCTGGAGGGCTACATCAGCGTCCTGGAGCACAAG
Seq C2 exon
CCTTTAAAAATGCACTGCAAGAGCTGTGCATTGGTAACCAGTTCTGGACACCTTCTGGGAAGTAAACAAGGTGACAGAATCGACGAGACGGAGTGCGTAATACGAATGAATGATGCACCTACTCGAGGTTATGGACAGGATGTTGGGAACAAAACAAGCCTTCGAGTCATTGCACACTCCAGCATTCAGAGGATTTTGCGAAATCGCAATGAACTCTTAAATATGAGCCACGGTGCTGTGTTCATCTTCTGGGGTCCTAGCAGCTACATGAGGAGAGATGGTAAAGGCTTGGTGTACAACAACCTGCAGCTGATGAATCAGATACTGCCTCAATTAAAAGCATACATGATTTCTCGCCACAAGATGCTTCAATTTGATGACCTTTTTAAACGGGAAACTGGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009021-'0-5,'0-0,1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.436 C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(15.1=52.6)
C2:
PF0077713=Glyco_transf_29=FE(50.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCACAAAATGAAGACCCTG
R:
TCATGTAGCTGCTAGGACCCC
Band lengths:
295-529
Functional annotations
There are 0 annotated functions for this event