BtaEX6017006 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007309 | ST6GALNAC5
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192804]
Coordinates
chr3:67889298-68073051:-
Coord C1 exon
chr3:68072775-68073051
Coord A exon
chr3:68071733-68071963
Coord C2 exon
chr3:67889298-67889707
Length
231 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTCTCCCGCCCGCAGCGC
3' ss Score
11.67
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
AGGACCCAGCAGGCGGCGGCAGGCGGCAGTTGTGTAGATCGCTGAGAGACTACGAGGGTCCGGTTCAGTTTTAATTCTGTCTCTAATCTCTGCAACAGCGGCGCTTCCTGGGTCCCGCGGCTCCCCTGCTCACTCAGCCGAGGCTGGCCGCCGGGCGAAAATCAAAGCCGCCTCCGCCCCGTCACCCACGATGGAAACCCTCCAAGAAAAAGTGGCCCCGGACGCGTGTGCCTAAGGATTCCGCACAAAAGAAGTGCCCAAAATGAAGACCCTGGTG
Seq A exon
CGCCATGGTCTGGCAGTGTGTTTAGCGCTCACCACCATGTGCACCAGCTTGTTGCTCGTGTACAGCAGCCTCGGAGGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGGCAGCGGCGACCCTCAGCTCTCGGCGGTCGGCAGAGAGCAGCCCCCCGCCGCGCCCGGAGACCCCCGCGGGACCGCGGCCACTGGACGGATACCTCGGCGTGGTGGACCACAAG
Seq C2 exon
CCGCTGAAAATGCACTGCAGGGACTGCGCCCTGGTGACGAGCTCCGGGCAGCTGCTGCGCAGCAGGCAAGGCGCCCAGATTGACCAGACTGAATGTGTCATTCGCATGAACGACGCCCCCACGCGTGGCTACGGGCGGGACGTGGGCAACCGCACCAGCCTGCGGGTCATCGCGCATTCCAGCATCCAGCGGATCCTCCGCAACCGCCATGACCTGCTCAACGTCAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGCCGCGACGGCAAGGGCCAGGTCTACAACAACCTGCAGCTGCTGAGCCAGGTGCTGCCCCGGCTGAAGGCCTTCATGATCGCGCGCCACAAGATGCTGCAGTTCGACGAGCTCTTCAAGCGCGAGACCGGCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007309-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.610 C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(17.1=62.3)
C2:
PF0077713=Glyco_transf_29=FE(48.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTAAGGATTCCGCACAA
R:
CCCCAGAAGATGAACACGGTG
Band lengths:
304-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]