GgaEX0013239 @ galGal4
Exon Skipping
Gene
ENSGALG00000009021 | SIAT7E
Description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:RefSeq peptide;Acc:NP_001264423]
Coordinates
chr8:18168027-18221761:-
Coord C1 exon
chr8:18220783-18221761
Coord A exon
chr8:18220012-18220245
Coord C2 exon
chr8:18168027-18168436
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTGCCCCCCGCAGCGC
3' ss Score
10.78
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCGCACAAGGAGTTGAGGGCGTCGATTTTTTTTACGAACGCGAATTTCAAGCGGTGCCTGAACGCCGCCGGCTGCAGCCAGCACAGCCGGCGGGGGAGAGCGGCGGATCCTCCGCCGGGGGGAAAACCCGGAGCGGCTCCACGTGAGGGTCGCGCCGCGGGGCTCCCCGCTGGCCGGCAGCCGGGGCCGCGTGCCCGCCGTGCCCCCGCCGGCGGCGGAGCAGCGCGCCCGAGGGGCGGCAGAAGTTAACTTCCACCTGCCCTGAAGCCGCCGCTGCGCCGGCGGGAGGAGGCGGAGGAGGAGGCGGAGGCAGGCGGGGCGGCCGAGGACCCGGCTCTGGCAGAGCTCCGAGGGTCCGGCCGGCTGTAATTCCCCCCTAATCCCCTGCACGGCGGCGCTTCCCCGGCCGAGCCATGGCCGCGGCTCCCCCGCCATGCCGAGCCTAGCGGGGAGCGGGCGGAGCGGCGCCCGGGAGGCGCACAAAATGAAGACCCTGATG
Seq A exon
CGCCACGGGCTGGCCGTCTGCTTGGCGCTCACCACCATGTGCACCAGCTTGTTGCTCATGTACGGCGGCATCGGAGGCGGCGGCGGGGGCCACCCGGAGCCTCGGCGGCGGCAGCAGCAGCAGCAGCAGGTGGCGGCGGTGCCCAGCCGCCCTCCGGGACGCGGCCAGCACCGCCCAGCGCTCCCCGTCGGGGCCGGACTCCTGGAGGGCTACATCAGCGTCCTGGAGCACAAG
Seq C2 exon
CCTTTAAAAATGCACTGCAAGAGCTGTGCATTGGTAACCAGTTCTGGACACCTTCTGGGAAGTAAACAAGGTGACAGAATCGACGAGACGGAGTGCGTAATACGAATGAATGATGCACCTACTCGAGGTTATGGACAGGATGTTGGGAACAAAACAAGCCTTCGAGTCATTGCACACTCCAGCATTCAGAGGATTTTGCGAAATCGCAATGAACTCTTAAATATGAGCCACGGTGCTGTGTTCATCTTCTGGGGTCCTAGCAGCTACATGAGGAGAGATGGTAAAGGCTTGGTGTACAACAACCTGCAGCTGATGAATCAGATACTGCCTCAATTAAAAGCATACATGATTTCTCGCCACAAGATGCTTCAATTTGATGACCTTTTTAAACGGGAAACTGGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009021_MULTIEX1-1/6=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.818 A=0.458 C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(15.1=52.6)
C2:
PF0077713=Glyco_transf_29=FE(50.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCACAAAATGAAGACCCTG
R:
TCATGTAGCTGCTAGGACCCC
Band lengths:
295-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]