HsaEX6031681 @ hg19
Exon Skipping
Gene
ENSG00000117069 | ST6GALNAC5
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:HGNC Symbol;Acc:19342]
Coordinates
chr1:77333126-77510298:+
Coord C1 exon
chr1:77333126-77333375
Coord A exon
chr1:77334182-77334427
Coord C2 exon
chr1:77509889-77510298
Length
246 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCGCCCGCCCGCAGCGC
3' ss Score
10.77
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
AGTTGTGTAGATCGCTGAGAGACTACGAGGGTCCGGTTCAGTTTTAATTCTGTCTCTAATCTCTGCAACAGCCGCGCTTCCCGGGTCCCGCGGCTCCCGCGCGCGATCTGCCGCGGCCGGCTGCTGGGCAAAAATCAGAGCCGCCTCCGCCCCATTACCCATCATGGAAACCCTCCAGGAAAAAGTGGCCCCGGACGCGCGAGCCTGAGGATTCTGCACAAAAGAGGTGCCCAAAATGAAGACCCTGATG
Seq A exon
CGCCATGGTCTGGCAGTGTGTTTAGCGCTCACCACCATGTGCACCAGCTTGTTGCTAGTGTACAGCAGCCTCGGCGGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGGCGTCGGCCACCGGCAGCTCGCAGCCGGCGGCGGAGAGCAGCACCCAGCAGCGCCCCGGGGTCCCCGCGGGACCGCGGCCACTGGACGGATACCTCGGAGTGGCGGACCACAAG
Seq C2 exon
CCCCTGAAAATGCACTGCAGGGACTGTGCCCTGGTGACCAGCTCAGGGCATCTGCTGCACAGTCGGCAAGGCTCCCAGATTGACCAGACAGAGTGTGTCATCCGCATGAATGACGCCCCCACACGCGGCTATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATCGCGCATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGGCGGGACGGCAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCAGGTGCTGCCCCGGCTGAAGGCCTTCATGATTACTCGCCACAAGATGCTGCAGTTTGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117069-'0-4,'0-0,1-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.671 C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(28.4=72.0)
C2:
PF0077713=Glyco_transf_29=FE(65.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAATCTCTGCAACAGCCGC
R:
CATGCGGATGACACACTCTGT
Band lengths:
304-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)