DreEX6025656 @ danRer10
Exon Skipping
Gene
ENSDARG00000039220 | st6galnac5a
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a [Source:ZFIN;Acc:ZDB-GENE-070705-488]
Coordinates
chr2:9388954-9461902:-
Coord C1 exon
chr2:9461800-9461902
Coord A exon
chr2:9461072-9461266
Coord C2 exon
chr2:9388954-9389366
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCCCGTGTTTTCCAGCGT
3' ss Score
9.67
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTCGACATAATCTGATGAAGTAGCAACAATCAGGGGGAAAAGTGGATCTTCATGCGCACATCCAGGGAATATTCCAGCTGGCTTCAGGATGAAGACACCGATG
Seq A exon
CGTCATGGAGTTGCCGTGTTTCTCGCCATCACCATGTGCACCAGTCTGTTGTTCGTGTATAACGTCAGCTACAATAATAATAGCACTACAGCAGCCAGCGCGTCTAAGGGCGCTTCAGGTGAGACAGTGGAGCCCACCAGAGCGGCCCGCGCGCATCCAGCACTGCAGGGATACAGCAGCATCATTGAGCACAAG
Seq C2 exon
CCTTTGAAGATGCACTGCAGGAGCTGTGCGCTGGTCACTAGCTCTGGTCATCTAACCGGTGGGGGTCGCGGAAAAGAGATCGATCAGGCAGAGTGCGTCATCCGAATGAATGACGCGCCCATAGCTCGTGGCTATGGGGCGGACGTGGGTCACCGCACGAGCCTGAGGGTCATTGCTCATTCCAGCATGCAGAGAGTGCTGCGCAGCCGCCATGAACTTCTCAACTCCAGCCAGGAAACAGTCTTCATATTTTGGGGACCCAGCAGTTACATGCGACGGGACGGGAAAGGCCTGGTTTATAACAATCTGCGGCTTATGAACCAAGTGCTCCCCAAACTCAAGGTCTACATTATCTCCTGGCAGAAAATGCTCCAGTTTGATGATTTATTCAAGAGGGAGACTGGTAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039220-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.303 C2=0.004
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(24.2=67.7)
C2:
PF0077713=Glyco_transf_29=FE(49.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCATGCGCACATCCAGG
R:
GCACTCTCTGCATGCTGGAAT
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]