MmuEX6074798 @ mm10
Exon Skipping
Gene
ENSMUSG00000039037 | St6galnac5
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:MGI Symbol;Acc:MGI:1349471]
Coordinates
chr3:152846261-152982246:-
Coord C1 exon
chr3:152982003-152982246
Coord A exon
chr3:152981058-152981300
Coord C2 exon
chr3:152846261-152846670
Length
243 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCCGCCCGCCTGCAGCGC
3' ss Score
9.59
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
AGTGTGTGGATCGCTAAGACTCGGAGGGTCCGGCTCAGTTTTAATTCTCCTCTAATCTCTGCAACAGCAGCGCTTCCCGGTCCCGCGGCTCCTGCTCCCGCTCAGCTGCCGTCACTGCCAGGTGAGCATCTGAGCAGCCTCCGCCCCATCACCCACCATGGACAACCTCCAAGAAAAAGTGGCTCCGGACGCGCTTGCCTGAGAATTCCGCACAAAAGAGGAGCCCAAAATGAAGACCCTGATG
Seq A exon
CGCCATGGTCTGGCAGTGTGTTTAGTGCTCACTACCATGTGCACCAGCTTGTTGCTCGTGTACAGCAGCCTCGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCAACCGCGACTGGCAGCACGCAGCTTGTGGAGAGCAGTCCCCAGCCACGTAGAACCGCCCCCGCAGGACCCCGGCAGCTCGAAGGATACCTCGGTGTAGCAGACCACAAG
Seq C2 exon
CCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGTGACCAGCTCAGGGCATCTGCTGCGTAGTCAGCAGGGCCCCCACATCGACCAGACAGAGTGTGTTATCCGCATGAATGATGCCCCCACCCGAGGCTATGGGCTTGACGTGGGCAACCGCACGAGCCTGCGGGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGCCGGGATGGCAAGGGCCAGGCGTACAACAACCTACAGCTCCTTAGCCAAGTGCTGCCTCGGCTGAAGGCCTTCATGATCACGCGCCACAGGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039037-'0-4,'0-0,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.630 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
PF0077713=Glyco_transf_29=PU(20.3=72.8)
C2:
PF0077713=Glyco_transf_29=FE(46.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAAAGTGGCTCCGGACG
R:
TCACATTGAGCAGGTCATGGC
Band lengths:
300-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types