DreEX0078393 @ danRer10
Exon Skipping
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4432052-4437903:-
Coord C1 exon
chr15:4437752-4437903
Coord A exon
chr15:4435242-4435408
Coord C2 exon
chr15:4432052-4432094
Length
167 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTTCCTGCACACAGGTG
3' ss Score
7.97
5' ss Seq
CCAGTACGT
5' ss Score
7.19
Exon sequences
Seq C1 exon
CAGGTCGCCTTTAAGAATCTGGTGCAGAGGAACCAGGCCAGCGAAGCGTCGTCCCGTTCCAGTCCTCCTGCAGGATCTGTCATTCAGCTTCCCTTTATCATTCTCAACACAGACGTCCGCACCGTCATCGACTGCTCCATCTCTAGCGACAA
Seq A exon
GTGTGAATACCTCTTCAACTTTGACAACACGTTTGAGATTCACGATGACGTTGAGATCCTGAAGCGGATGGGAATGTCTCTGGGCCTTGAGAACGGCACATGCTCTCCACAAAACCTCACTCTGGCCAAATCTCTGGTGCCCAAATCTCTCGAAGCTTACATCACCA
Seq C2 exon
ATATGGCTAGAAATTCCACCAGAACACCTCTCAGCCTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835-'29-26,'29-25,33-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.533
Domain overlap (PFAM):
C1:
PF087815=DP=FE(37.0=100)
A:
PF087815=DP=FE(38.6=100)
C2:
PF087815=DP=PD(5.5=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCGCCTTTAAGAATCTGGT
R:
TTGTGAGGCTGAGAGGTGTTC
Band lengths:
194-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]