DreEX0078507 @ danRer10
Exon Skipping
Gene
ENSDARG00000099979 | tgfbr3
Description
transforming growth factor, beta receptor III [Source:ZFIN;Acc:ZDB-GENE-120215-125]
Coordinates
chr6:24369508-24443892:+
Coord C1 exon
chr6:24369508-24369695
Coord A exon
chr6:24418123-24418260
Coord C2 exon
chr6:24443709-24443892
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCCTGTGTTCAGGTG
3' ss Score
11.59
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTCCATTGTCTCGGAGCCCTTGTGAACTTTTGCCAGTTGGTGTGGGTCACCCGGTTCAGGCAATGTTAAAGAGTTTTACCGCCCTCTCAGGCTGCGCAAGCAGAGGAACTACCAGCCACCCTCAGGAGGTGCACATCATCAACCTACGAAAAGGCAGTGCACAAGGAGCCAGAGAGAAAATGGCAGAG
Seq A exon
GTGGCGTTACATCTGCGGCCCATCCAGTCCCTGCATGTGCACCAGAAACCACTGGTTTTCATCCTGAACTCCCCTCAGCCCATCCTCTGGAAGGTCCGGACAGAGAAACTGGCCCCAGGAGTTAAACGTATCTTCCAT
Seq C2 exon
GTTGCAGAGGGATCTGAAGTGCACTTTGAGGTTGGGAATTTCTCAAAGTCGTGTGAAGTGAAGGTGGAAACTCTTCCTCATGGCAATGAGCATCTGCTTAATTGGGCTCATCACCGCTACACTGCAGTTACATCTTTCAGTGAGCTCAGGATGGCCCATGACATCTACATCAAGGTTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099979-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGAGGAACTACCAGCCA
R:
AGATGTCATGGGCCATCCTGA
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]