GgaEX1058256 @ galGal3
Exon Skipping
Gene
ENSGALG00000006038 | Q90998_CHICK
Description
NA
Coordinates
chr8:15090026-15119583:+
Coord C1 exon
chr8:15090026-15090210
Coord A exon
chr8:15107495-15107632
Coord C2 exon
chr8:15119400-15119583
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTATTTCTCTGTAGGTC
3' ss Score
11.14
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTCCTGTGCCAAGGAGCGAGTGTGTGCTATCTCCTGTTAACAGTTCACACCCAGTCCATGCCCTGTTGGAGAGTTTCACAGTCTTATCTGGCTGTGCAAGCCGAGGCACAACAGGCCTACCACAAGAGGTGCATGTCCTCAATCTCAGAAATCCCGATGAAGGTCTTGACCATCATGAAAGAGAG
Seq A exon
GTCACATTACACTTGACTCCAATTTCATCAGTGCATATTCACCAGAAGCCTCTGGTGTTTCTTCTCAACTCGCCTTTGCCCCTGGTCTGGAAGCTAAAAACAGAAAGACTGGCACCTGGAATCCGGAGAGTTTTCTTT
Seq C2 exon
GTGTCTTCAGGTTCCATTGTTTGGTTCGAGAAGGGAAATTTCTCTTTGTCAGCAGAAACGGAAGAAAAGAATTTTCCTGAGAGAAATGAACATCTGTTACAGTGGGCCCAAAAGGAATATGGAGCAGTAACGTCTTTCACCGAACTCAAAATATCAAGAAACATCTATATTAAAGTAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006038-'3-7,'3-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCCCTGTTGGAGAGTT
R:
CCTTTTGGGCCCACTGTAACA
Band lengths:
246-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]