DreEX6015118 @ danRer10
Exon Skipping
Gene
ENSDARG00000088795 | TGFBR3L
Description
transforming growth factor, beta receptor III-like [Source:HGNC Symbol;Acc:HGNC:44152]
Coordinates
chr3:5833748-5834680:-
Coord C1 exon
chr3:5834520-5834680
Coord A exon
chr3:5834317-5834454
Coord C2 exon
chr3:5833748-5833922
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCAGCTGTATCTGTCTGCAGGTG
3' ss Score
9.81
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGTCCAGCAGGGAGTTGCAGTGCTCCGTGTCTCCAGTGGCGGCGCTGCACCCTGTTCAGGCCCAGCTCGAGCGCTTTGAGGCGGGAACAGGTTGTGCATCCAGAGAGGGCGGAGCTAAAGAGACACATGTTATCTCAGTGGGCGGAGCCTCCAGCAGACAG
Seq A exon
GTGACAGTGGTGTTGAGACCCCTGAATCCCTCTCGACCAATCAAACGACCCGTCATTCTAGTGCTCAGCTCTCAGCAGGCCGTGCGTTGGGTTTTGGAAAATGAGGGACTGTCAAGCAACATCAATGTGCTGGTGCAG
Seq C2 exon
TTGTCTGTGAACTCCACGGCAGAGTCTTCGAGTCTGTCTGTCCGCGTAACGCAGGTCCCATCTCTGCCGCGGCGGCCTCGAGTGCTGCTGCGCTGGGTTCTGCAGCGCCACGCCACCGTCACCTCCCTCACACACACCACACACTCCAACCGGATTTACTTGCGCCTGGGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088795-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGTGCATCCAGAGAGG
R:
CTCCCAGGCGCAAGTAAATCC
Band lengths:
246-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]