HsaEX0064723 @ hg38
Exon Skipping
Gene
ENSG00000069702 | TGFBR3
Description
transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]
Coordinates
chr1:91734776-91797471:-
Coord C1 exon
chr1:91797287-91797471
Coord A exon
chr1:91758613-91758750
Coord C2 exon
chr1:91734776-91734959
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTGTTGCTTCCTAGGTC
3' ss Score
11.59
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCAGAGCCTGGTGCACTGTGTGAACTGTCACCTGTCAGTGCCTCCCATCCTGTCCAGGCCTTGATGGAGAGCTTCACTGTTTTGTCAGGCTGTGCCAGCAGAGGCACAACTGGGCTGCCACAGGAGGTGCATGTCCTGAATCTCCGCACTGCAGGCCAGGGGCCTGGCCAGCTACAGAGAGAG
Seq A exon
GTCACACTTCACCTGAATCCCATCTCCTCAGTCCACATCCACCACAAGTCTGTTGTGTTCCTGCTCAACTCCCCACACCCCCTGGTGTGGCATCTGAAGACAGAGAGACTTGCCACTGGGGTCTCCAGACTGTTTTTG
Seq C2 exon
GTGTCTGAGGGTTCTGTGGTCCAGTTTTCATCAGCAAACTTCTCCTTGACAGCAGAAACAGAAGAAAGGAACTTCCCCCATGGAAATGAACATCTGTTAAATTGGGCCCGAAAAGAGTATGGAGCAGTTACTTCATTCACCGAACTCAAGATAGCAAGAAACATTTATATTAAAGTGGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000069702_MULTIEX1-7/8=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTGATGGAGAGCTTCAC
R:
GCTCCATACTCTTTTCGGGCC
Band lengths:
252-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development