RnoEX0090218 @ rn6
Exon Skipping
Gene
ENSRNOG00000002093 | Tgfbr3
Description
transforming growth factor beta receptor 3 [Source:RGD Symbol;Acc:61821]
Coordinates
chr14:3573007-3633843:+
Coord C1 exon
chr14:3573007-3573191
Coord A exon
chr14:3610076-3610213
Coord C2 exon
chr14:3633660-3633843
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTGTTGACTCCTAGGTT
3' ss Score
8.73
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTCCAGAGCCCAGCACCCGGTGTGAACTGTCACCAATCAACGCCTCTCACCCAGTCCAGGCCTTGATGGAGAGCTTCACCGTTCTGTCTGGCTGTGCCAGCAGAGGCACCACCGGGCTGCCAAGGGAGGTCCATGTCCTAAACCTCCGAAGTACAGATCAGGGACCAGGCCAGCGGCAGAGAGAG
Seq A exon
GTTACCCTGCACCTGAACCCCATTGCCTCAGTGCACACTCACCACAAACCTATCGTGTTCCTGCTCAACTCCCCCCAGCCCCTGGTGTGGCATCTGAAGACGGAGAGACTGGCCGCTGGTGTCCCCAGACTCTTCCTG
Seq C2 exon
GTTTCGGAGGGTTCTGTGGTCCAGTTTCCATCAGGAAACTTCTCCTTGACAGCAGAAACAGAGGAAAGGAATTTCCCTCAAGAAAATGAACATCTGCTGCGCTGGGCCCAAAAGGAATATGGAGCAGTGACTTCGTTCACCGAACTCAAGATAGCAAGAAACATCTATATTAAAGTGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002093-'11-11,'11-7,16-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.109 C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGATGGAGAGCTTCACC
R:
ATATTCCTTTTGGGCCCAGCG
Band lengths:
246-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]