MmuEX1025890 @ mm10
Exon Skipping
Gene
ENSMUSG00000029287 | Tgfbr3
Description
transforming growth factor, beta receptor III [Source:MGI Symbol;Acc:MGI:104637]
Coordinates
chr5:107154252-107215077:-
Coord C1 exon
chr5:107214893-107215077
Coord A exon
chr5:107177805-107177942
Coord C2 exon
chr5:107154252-107154435
Length
138 bp
Sequences
Splice sites
3' ss Seq
TACTTTGTGTGGTCTCCTAGGTT
3' ss Score
8.72
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTCCAGAGCCCAGCACCCGGTGTGAACTGTCACCGATCAGTGCCTCTCATCCAGTCCAGGCCCTGATGGAGAGCTTCACCGTTCTGTCTGGCTGTGCCAGCAGAGGCACCACTGGGCTGCCAAGGGAGGTTCACATCCTAAACCTCCGCAGTACAGACCAAGGACTAGGCCAGCCGCAGAGAGAG
Seq A exon
GTTACCCTGCATCTGAACCCCATTGCCTCCGTGCACACTCACCACAAGCCTGTTGTGTTCCTGCTCAACTCCCCACAGCCCCTGGTGTGGCATGTGAAGACAGAGAGACTGGCTGCTGGTGTCCCCAGACTCTTCCTG
Seq C2 exon
GTTTCGGAGGGTTCTGTGGTCCAGTTTTCATCAGGAAACTTCTCCTTGACAGCAGAAACAGAGGAAAGGAGTTTCCCTCAAGAAAATGAGCATCTGCTACACTGGGCCCAAAAGGAATATGGAGCAGTGACTTCATTCACCGAACTTAAGATAGCAAGAAATATCTATATTAAAGTGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029287-'13-13,'13-12,18-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.065 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCTTCACCGTTCTGTC
R:
TGCTCCATATTCCTTTTGGGCC
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types