BtaEX6016645 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024269 | TGFBR3
Description
transforming growth factor, beta receptor III [Source:HGNC Symbol;Acc:HGNC:11774]
Coordinates
chr3:51745964-51815632:+
Coord C1 exon
chr3:51745964-51746148
Coord A exon
chr3:51792063-51792200
Coord C2 exon
chr3:51815449-51815632
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTGTTTCTTCCTAGGTC
3' ss Score
12.59
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCAGAGCCCCGTGCCCAGTGTGAACTGTCGCCTGTCAACGCCTCCCATCCGGTCCAGGCCTTGATGGAGAGCTTTACCGCCTTGTCGGGATGTGCCAGTAGGGGCACGGTGGGGCTGCCCCAGGAGGTGCATGTCCTGAACCTCCGTGCCGCCGACCAGGGGCCCGGCCAGCCGCAGAGAGAG
Seq A exon
GTCACTCTGCACCTGAATCCCATCTCCTCAGTCCACATTCACCACAAGCCTGTCGTGTTCCTGCTCAATTCCCCACAGCCCCTGGTTTGGCATCTGAAGACAGAGAGACTGGCAGCTGGGGTCTCCAGACTTTTCTTG
Seq C2 exon
GTGTCTGAAGGTTCTCTGGTCCATTTTTCATCAAGAAACTTCTCCTTGTCAGCAGAAACAGAAGAAAGGAGCTTCCCCCATGGAAACGAACATCTGTTAAATTGGGCCCGAAAGGAATATGGAGCGGTCACTTCATTCACTGAACTCAAGATAGCAAGAAACATTTATATTAAAGTGGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024269-'11-7,'11-6,21-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=0.043 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCTTTACCGCCTTGTC
R:
CCGCTCCATATTCCTTTCGGG
Band lengths:
245-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]