DreEX0078838 @ danRer10
Exon Skipping
Gene
ENSDARG00000025920 | tiam1b
Description
T-cell lymphoma invasion and metastasis 1b [Source:ZFIN;Acc:ZDB-GENE-120221-1]
Coordinates
chr15:42577102-42581937:+
Coord C1 exon
chr15:42577102-42577227
Coord A exon
chr15:42578810-42578918
Coord C2 exon
chr15:42581758-42581937
Length
109 bp
Sequences
Splice sites
3' ss Seq
CAAATCCCTCCGTCTCACAGAAG
3' ss Score
6.92
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
CTGGACGTGCTGTTCGGAAACCTCCCAGAGATGTTGGAGTTCCAAGTGGAGTTTCTGAAGACTCTGGAAGACGGAACCAGACTGGTGCCTGACCTGGAGAAACTGGAGCGGGTGGAGGAGTTCAAG
Seq A exon
AAGATCCTGTTTTCTCTGGGCGGCTCATTCCTGTATTACGCCGACCGCTTCAAGATCTACAGCGCCTTCTGTGCCAGCCACACCAAAGTGCCCAAAGTGCTGGTCAAAG
Seq C2 exon
CGAAGACAGACGCAGCCTTCAAGGCCTTTCTGGATGAACGTAACCCCAAACAGCAGCATTCGTCCACGCTGGAGTCATACCTGATCAAGCCCATCCAGAGAGTGCTGAAATACCCTCTGCTGCTGAGAGAACTACACTCGCTCACTGACCCTGACAGCGAAGAGCACTACCACCTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025920-'27-25,'27-23,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGGAAACCTCCCAGAGA
R:
AGTTCTCTCAGCAGCAGAGGG
Band lengths:
249-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]