DreEX0080508 @ danRer10
Exon Skipping
Gene
ENSDARG00000024829 | tnw
Description
tenascin W [Source:ZFIN;Acc:ZDB-GENE-990415-262]
Coordinates
chr2:35541899-35558741:-
Coord C1 exon
chr2:35558652-35558741
Coord A exon
chr2:35545736-35545999
Coord C2 exon
chr2:35541899-35542162
Length
264 bp
Sequences
Splice sites
3' ss Seq
TAAATGATCTCATCCAACAGACA
3' ss Score
6.4
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCTCAACCCTGGAACAGAATATCAGATAGGAGTGCAAGCGATCAAAGGTGAAAATGAAGGCAAGGCATCGTTTGCTACAGGGGTCACAG
Seq A exon
ACATCGATGCCCCAACAAATCTAGCAACCAGGGAGGTGACGGAAAACTCTGCGACTGTGACATGGGACGGTGTCCGCGCTGAAATCGATGGCTACATGCTGACTTACAGCTCGGCAGAGGGCACCAGCCGAGAAATTAAAGTGGCAGCGGGTGCCACATCTTACCAGCTGACCTCTCTGAAGCCAGGAGTCCTGTACACAGTTTTCCTCTGGGCCTATAAGGGCTCTCGTTCCAGCAGGAAGAGCATGACTGAGGCTGAGACGG
Seq C2 exon
ACATAGATGCTCCTACTAACCTCATGACCAGGGAAGTGACAGAGGACTCAGCTTCGGTGACGTGGAACAAGGTGCAGGCTGACATTGATGGCTACATGCTGAAATACAGCTCTCTAGACGGCTCCGGCCAGGAGGTTCGAGTAGGAGCTGACAGCACCTCCTACAGGTTCACGGGTCTCAAGCCTGGTGTTCTCTACACAGTCTATGTGTGGGCCATCAAAGGCGCTCGCTCTAGCAAAAAGAGTTCAACAGAAGCGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024829-'7-10,'7-8,10-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.192 C2=0.232
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.7=74.2)
A:
PF0004116=fn3=WD(100=89.9)
C2:
PF0004116=fn3=WD(100=89.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTGCAAGCGATCAAAGG
R:
CTAGAGCGAGCGCCTTTGATG
Band lengths:
297-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]