GgaEX6043893 @ galGal4
Exon Skipping
Gene
ENSGALG00000004538 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr8:7063524-7065975:-
Coord C1 exon
chr8:7065886-7065975
Coord A exon
chr8:7064615-7064878
Coord C2 exon
chr8:7063524-7063787
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTCAAAATGCTGTTCTCAGGAA
3' ss Score
6.3
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCCTGAAACCTGGCATGGAGTATGAGGTTACTGTCATACCTGTGAAAGATGATATAGAGGGTAAACCATCGTCAGTGAGTGGCAGGACAG
Seq A exon
GAATTGATAGCCCAACCAATGTGGTGACAGGTCGAGTGACAGAGGACACAGCCACTGTCTCATGGAATAAAGTTCAGGCTCCCATAGACAGGTACATGGTGAGATACACCTCAGCTGATGGAGACACCAAGGAAACAGAGGTAGGCAGTGAAAACAGCATCATCACCTTATTGAATCTGAAGCCAGGCATGGAATACACCATCCACATCTGGGCAGAGAAGGGACCCCATAGGAGCAAGAAAGCCAGCACCAGAGCTCTGACAG
Seq C2 exon
GGATTGACAGCCCAACTAAGCTGTTGACTGACCATGTGACAGAGAATACAATCACTGTTGCCTGGAACAAAGTCCAGGCGTTAATAGATAGATACAGAGTGAATTACACCTCGGCTGATGGGGATACAGAGGAGAGAGAAGTGGAGAAAGACAAGAATGTTACCACCTTGGCAGGACTGGAGCCAGGCATGGAGTATGTTATTCACATCTGGGCAGAAAAGGGAGAACAACAGAGCAAGAGGGCCAGCACTGAGGCTGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004538-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.427 C2=0.360
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.4=74.2)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=89.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCATGGAGTATGAGGT
R:
CCCTTTTCTGCCCAGATGTGA
Band lengths:
306-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]