RnoEX6044979 @ rn6
Exon Skipping
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77869300-77881014:-
Coord C1 exon
chr13:77880925-77881014
Coord A exon
chr13:77872529-77872792
Coord C2 exon
chr13:77869300-77869563
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCTTATCTGTGAAGAAA
3' ss Score
4.7
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTGCAGCCTGGAACGGAATATAAAATCACAGTTGTGCCCATAAGAGGAGATCTGGAGGGAAAGCCAATTCTCCTCAATGGCAGGACAG
Seq A exon
AAATTGATGGACCAACCAATGTGGTCACAAACCAAGTGACAGAAGACACAGCATCTGTTTCCTGGGATCCAGTGAGGGCTGACATAGACAAGTATGTGGTGCGCTATATCTCCCATGATGGGGAGACCAAGGAGAAGGCAGTACCCAAGGACCAGAGCAGCACCGTTCTCACGGGCCTGAAGCCAGGAGAGGCCTACAAAGTCTTTGTGTGGGCTGAGAGAGGCAACCAAGGCAGCAAGAAAGCAGACACCAAGGCCCTCACAG
Seq C2 exon
AAATTGACAGCCCAGAAAACCTGGTGACCGACCGTGTGACAGAGAACAGTCTCTCTGTCTCGTGGGACCCGGTGGAGGCTGAAATAGACAGGTACGTGGTGAGCTACACTTCCGTGGATGGAGAGACAAAGCAGGTTCCAGTGAGGAAGGACCAAAGCAGCACCGTCCTCACCGGCCTGAGTCCAGGTGTGGAGTACAAAGTGTACGTGTGGGCAGAGAAAGGTGATCGAGAGAGCAAGAAGGCCAACACCAAGGCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548-'7-8,'7-6,8-8=AN
Average complexity
A_S
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.479 C2=0.483
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=88.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATCTGGAGGGAAAGCC
R:
GTTGGCCTTCTTGCTCTCTCG
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]