HsaEX6035022 @ hg19
Exon Skipping
Gene
ENSG00000120332 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:22942]
Coordinates
chr1:175054541-175066819:+
Coord C1 exon
chr1:175054541-175054630
Coord A exon
chr1:175063126-175063389
Coord C2 exon
chr1:175066553-175066819
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCTCATGTGTTTTTATGAAGAAA
3' ss Score
4.5
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCTGCACCCGGGGACTGAGTATAAGATCACGGTGGTGCCCATGAGAGGAGAGCTGGAGGGCAAGCCGATCCTCCTGAATGGCAGGACAG
Seq A exon
AAATTGACAGTCCAACCAATGTTGTCACTGATCGAGTGACTGAAGACACAGCAACTGTCTCCTGGGACCCAGTGCAGGCTGTCATAGACAAGTATGTAGTGCGCTACACTTCTGCTGATGGGGACACCAAGGAAATGGCAGTGCACAAGGATGAGAGCAGCACTGTCCTGACGGGCCTGAAGCCAGGAGAGGCATACAAGGTCTACGTGTGGGCTGAAAGGGGCAACCAGGGGAGCAAGAAAGCTGACACCAATGCCCTCACAG
Seq C2 exon
AAATTGACAGCCCAGCAAACCTGGTGACTGACCGGGTGACTGAGAATACCGCCACCATCTCCTGGGACCCGGTACAGGCCACCATTGACAAGTACGTGGTGCGCTACACCTCTGCTGACGACCAAGAGACCAGAGAGGTTCTGGTGGGGAAGGAGCAGAGCAGCACTGTCCTGACAGGCCTGAGGCCAGGTGTGGAGTACACAGTGCATGTCTGGGCCCAGAAGGGGGACCGAGAGAGCAAGAAGGCTGACACCAACGCCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120332-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.461 C2=0.511
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.8=71.0)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGAGGAGAGCTGGAGGG
R:
GGTGTCAGCCTTCTTGCTCTC
Band lengths:
304-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)