MmuEX0048331 @ mm9
Exon Skipping
Gene
ENSMUSG00000026725 | Tnn
Description
tenascin N [Source:MGI Symbol;Acc:MGI:2665790]
Coordinates
chr1:162056597-162069469:-
Coord C1 exon
chr1:162069380-162069469
Coord A exon
chr1:162060815-162061078
Coord C2 exon
chr1:162056597-162056726
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCTTATGTATGAAGAAA
3' ss Score
3.05
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GTCTGCAGCCTGGAACGGAATATAAAATCACAGTTGTGCCCATCCGAGGTGATCTGGAGGGAAAGCCGATTCTCCTGAATGGCAGGACAG
Seq A exon
AAATTGATGGACCAACCAATGTGGTCACAAATCAGGTGACAGAAGACACAGCATCTGTTTCCTGGGATCCAGTGAGGGCTGACATAGACAAGTATGTGGTGCGCTATATCGCCCCCGATGGGGAGACCAAGGAGAAGGCAGTACCAAAGGACCAGAGCAGCACCGTTCTCACAGGCCTGAAGCCAGGAGAGGCCTACAAAGTCTTTGTGTGGGCTGAGAGGGGCAACCAAGGCAGCAAGAAAGCAGACACCAAGGCCCTCACAG
Seq C2 exon
AAATTGACAGTCCAGAAAACCTGGTGACTGACCGGGTGACAGAGAACAGCCTCTCTGTCTCGTGGGACCCAGTGGAGGCTGACATCGACAGGTATGTGGTAAGCTACACTTCCGTGGATGGAGAGACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026725-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
75%=75=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.473 C2=0.361
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0201812=CBM_4_9=PD(31.9=81.8),PF142921=SusE=PD(67.9=86.4),PF0004116=fn3=PU(80.4=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCAGCCTGGAACGGAAT
R:
TTCGTCTCTCCATCCACGGAA
Band lengths:
220-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: