BtaEX0037272 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015650 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr16:57797792-57812994:+
Coord C1 exon
chr16:57797792-57797881
Coord A exon
chr16:57808558-57808821
Coord C2 exon
chr16:57812731-57812994
Length
264 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTTATGTTTATGAAGAAA
3' ss Score
3.24
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCTGCAGCCGGGGACGGAATATAAGATCACAGTCATCCCCATGAGGGGAGACCTCGAGGGCAAGCCGATTCTTCTGAATGGCAGGACAG
Seq A exon
AAATTGATAGTCCAACCAATGTGGTCACCGACCGAGTGACTGAAGACACAGTGGCGGTCTCCTGGGACCCAGTTCGGGCGGTCATCGATAAGTACATGGTGCGCTACATCTCCGCTGACGGGGAGACCAAGGACACGGCGGTGCCCAGGGAGCAGAACAGCACTGTCCTGACAGGCCTGAGGCCGGGGGAGGCCTATGAAGTCTACGTGTGGGCTGAGAGGGGCAACCAGGGGAGCAAGAAGGTGGACACCACGGCCCTCACAG
Seq C2 exon
AAATTGACAGCCCTCAGAACCTGGTGACAGAGCAGGTGACGGAGAACACGGCCACCGTCTCCTGGGACCCGGTGCAGGCCGTCATCGACAGGTACCTGGTGCGCTACATCTCTGCTGACGGAGACACCAGGGAGGTTCCGGTGGGGAAGGAGCAGAGCAGCACCGTCCTGACGGGCCTGAGGCCGGGTGTGGAGTACACGGTCCATGTGTGGGCGCAGAAGGGGGACCGGGAGAGCAGGAAGGCTGACACCAAGGCCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015650_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.417 C2=0.551
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(26.8=71.0)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=88.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGGGCAAGCCGATTCTT
R:
CCTTGGTGTCAGCCTTCCTG
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development