MmuEX0048331 @ mm10
Exon Skipping
Gene
ENSMUSG00000026725 | Tnn
Description
tenascin N [Source:MGI Symbol;Acc:MGI:2665790]
Coordinates
chr1:160126332-160139338:-
Coord C1 exon
chr1:160139249-160139338
Coord A exon
chr1:160130684-160130947
Coord C2 exon
chr1:160126332-160126595
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCTTATGTATGAAGAAA
3' ss Score
3.05
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GTCTGCAGCCTGGAACGGAATATAAAATCACAGTTGTGCCCATCCGAGGTGATCTGGAGGGAAAGCCGATTCTCCTGAATGGCAGGACAG
Seq A exon
AAATTGATGGACCAACCAATGTGGTCACAAATCAGGTGACAGAAGACACAGCATCTGTTTCCTGGGATCCAGTGAGGGCTGACATAGACAAGTATGTGGTGCGCTATATCGCCCCCGATGGGGAGACCAAGGAGAAGGCAGTACCAAAGGACCAGAGCAGCACCGTTCTCACAGGCCTGAAGCCAGGAGAGGCCTACAAAGTCTTTGTGTGGGCTGAGAGGGGCAACCAAGGCAGCAAGAAAGCAGACACCAAGGCCCTCACAG
Seq C2 exon
AAATTGACAGTCCAGAAAACCTGGTGACTGACCGGGTGACAGAGAACAGCCTCTCTGTCTCGTGGGACCCAGTGGAGGCTGACATCGACAGGTATGTGGTAAGCTACACTTCCGTGGATGGAGAGACGAAGCAGGTTCCAGTGAAGAAGGACCAGAGGAGCACCGTCCTCACCGGCCTGAGTCCCGGTGTGGAGTACAAAGTTTACGTGTGGGCAGAGAAAGGCGATCGGGAGAGCAAGAAGGCCAACACCAAGGCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026725-'5-6,'5-5,10-6
Average complexity
C1
Mappability confidence:
92%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.480 C2=0.483
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=88.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTGGAGGGAAAGCCGAT
R:
TTGGTGTTGGCCTTCTTGCTC
Band lengths:
294-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types