DreEX0081643 @ danRer10
Exon Skipping
Gene
ENSDARG00000057918 | tsc1b
Description
tuberous sclerosis 1b [Source:ZFIN;Acc:ZDB-GENE-030131-3404]
Coordinates
chr21:17288742-17291037:+
Coord C1 exon
chr21:17288742-17288838
Coord A exon
chr21:17289271-17289366
Coord C2 exon
chr21:17290446-17291037
Length
96 bp
Sequences
Splice sites
3' ss Seq
GAGTTTTTTATCTGACCCAGATG
3' ss Score
5.4
5' ss Seq
ATGGTATAA
5' ss Score
2.05
Exon sequences
Seq C1 exon
GATGGTAGACCTTTAGACCATATTAAACCGGTCTTGGTCAGACAAGAGCAACTCAGAGAGTCTGAAAAAACTGGGCCTGAAACGATGAATCACAGAG
Seq A exon
ATGGCAGAGGTGAAAACATGCCCATGACCCTGACTGAGCTCTCTGTGTACATGAAGGAGCAAGAACAACTGAGGATCGAGAAGGAGAGGGAGGATG
Seq C2 exon
CTGCCATCACAGAGGAGCTCCTGAAGTTAACCGAGGAGAAGCGGGATCTAGCCGGCCTCCGTGGCTTCGACTCTCCATTCTTCAGCACTACAGAGACCCTGACTGGAGCACAACAGAAACCCCTGCCCTCCTCTATTCTTCACAACACCATCTCCACCCCTGACAAAACTGAAATAACACCCAGTGACAAAGGAAGAGTCAGCAGAGGCCCATCCCAAGAGCAACCCTGGTCCTTCCAGCCAGTGTTCATGCCCATCGAACACCCGACGCACAGCCTCCTTCATCGGAGCCCGTCAGCACCAGATGACGAGGCCTTAAAATTTGGCTTGTGTTCCCCGAGCCCATGCAAACCTCCACCCATGCCATACGAGGCTCTGTTTGACATGGCTCTGCCTCGGGCTGCCTCTCTTTTTGTGGGAAGGAAGACTTCAGAGATTGTGCAGCGAGTGGCGATGGAGAGGTTTCAGAGAGGGGATTCTGGCAGGCAAGGGGAGGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057918-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.740
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(4.2=100)
A:
PF043887=Hamartin=FE(4.2=100)
C2:
PF043887=Hamartin=FE(26.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGGCCTGAAACGATGAA
R:
GAATAGAGGAGGGCAGGGGTT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]