BtaEX0037917 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102979121-102980520:-
Coord C1 exon
chr11:102980451-102980520
Coord A exon
chr11:102979930-102980034
Coord C2 exon
chr11:102979121-102979679
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTCTCTGTATAGAAG
3' ss Score
7.56
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GAAGAGAGGACAGACTCCGCAAGGCCCTGTCTACACAGACAACCCCATGTTCCGAATGACAGAGGATTAG
Seq A exon
AAGAGCTGCACGGAGGCAAGGGATCTGTCACTCTCAGTGATCTTCCAGGGTTTTTAGGAGACCTGGCTTCTGAAGAAGACAGTATTGAGAAGGATAAAGAAGAAG
Seq C2 exon
CGGCCATATCTAAAGAGCTGTCTGAGATCACGACGGCCGATGCCGAGCCCCTGGTTCCTCGAGGAGGCTTCGACTCACCCTTCTACCGGGACAGTCTGCCGGGCTGCCCGCGGAAGACCCTCTCAGCTTCCTCCAGCACTCAGGGCACCAGCGCGAACCCTGAGCCTTTAAACTCCTCCCTGGACAAGTCGGGGCCTGACACACCAAAGCAAGCCTTCACGCCCATAGACCTGCCCTGCGGAGGCACCGGGGAGAGCCCTGCCGGGAACAGGGAGCGCCAGGCCTCTCTGGAGGCCAGCATCCTCACCCCCAGCCCCTGTAAAATTCCACCTCAGAGGGGAGTGGGGTTTGGCAGTGGGCAGCCTCCCCCATACGATCATCTTTTTGAGGTGGCATTGCCAAAGACTGCCCATCATTTTGTCAGCAAGAAGACGGAGGAACTGCTCAAGAAGGCAAAGGGAAGTGCAGAGGAGGACTTCACGCCCTCCGCCTCCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.850
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(3.2=100)
A:
PF043887=Hamartin=FE(4.9=100)
C2:
PF043887=Hamartin=FE(26.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGAGGACAGACTCCGCA
R:
TTTAAAGGCTCAGGGTTCGCG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development