DreEX6011361 @ danRer10
Exon Skipping
Gene
ENSDARG00000026048 | tsc1a
Description
tuberous sclerosis 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9111]
Coordinates
chr5:29060540-29061328:+
Coord C1 exon
chr5:29060540-29060597
Coord A exon
chr5:29060674-29060751
Coord C2 exon
chr5:29060848-29061328
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTTCGATCTTGCTATTCTAGGAG
3' ss Score
8.72
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
ACGTGCAAAGAGGTGAAGAAAGTCACATCCAGAAGTATTAATAACAGCAGTGAGAATG
Seq A exon
GAGGTGATGCCAAGACTCCAGTGTCGTTGGCACAGCTCTCTGACATTGTCAAAAGGACAGAGGGGGAGCGAGAGGATG
Seq C2 exon
ATACAATCAATGAGGAGATTTTGAGTCTAACCCATGGGAAACTAGACTTTGGATCTAGGCCTGGTCTGGAATCCTCATTTTCTGGCTCCTTAGACACCCTTCTCTCATCTCATCCTAATCATGAGCAGAATTTGGTATCCACACCAGACAGGGTTGAATGCTCGGCTAAAGCAGGAGAGCAGCAGCTTCCTAGGTCTCTCTGGCCGTTCACCCCCATTGAAAATGGGAAGCACAGTAAATGTTCTCTGTCTGATCTCACAAAAGAATCCATGCCTTATGAGCCACTGTTTGACCTCGCCCTGCCGAAGGTGGCATCTCTGTTTTTGGAGAGGAAGACTGCTGAGGCCTTTCGGAGGGTTGAAGGAGAAAGAGATCACCAAGATGAGATGGAAGGAGAGGATCTTTCTGTCACCTCCCCTCTGGAGGTGTTGGACCGGGTTATCCAGCAGGGTCACGACACTCATGGGAAAGTGCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026048-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.578
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(2.8=100)
A:
PF043887=Hamartin=FE(3.8=100)
C2:
PF043887=Hamartin=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCAAAGAGGTGAAGAAAGT
R:
AGGATGAGATGAGAGAAGGGTGT
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]