GgaEX1060752 @ galGal3
Exon Skipping
Gene
ENSGALG00000003500 | TSC1
Description
NA
Coordinates
chr17:7383379-7386089:-
Coord C1 exon
chr17:7386017-7386089
Coord A exon
chr17:7384635-7384733
Coord C2 exon
chr17:7383379-7383949
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTCTTTTTTTCAGACA
3' ss Score
11.58
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GAGGACAAACCAGATTCTGGGAGGCCTTCACTGTACCGACAGCAAAATGTCATAAGCAGCGATAAATCATTGG
Seq A exon
ACACATCTGGTAGTAAAAGTTCAGTAACCTTAAGTGATCTTCCGGAGTTTTTAGGCGGTTTGTCTTTTGAAGATAGTGCTGAAAAGGACAGAGAAGAAG
Seq C2 exon
ATGCAATATCTAAAGAGATCTCTGAGATCACGACTGATGCTGAACACATGGTGCCTAGAGGAGGATTTGACTCTCCATTTTATCACACAAATGAAAATCTGTCAGGTTCTCAGAAGAAGACCCAGTCAGTAGTCTCTAGTGTGCAGGGACACAGTCTGACCTCTGAGCCTTTAACGTCTTCTCTGGACAAGCCTGGGCCTGAGAGTGCACTGGAGACACCCAAACAAACATTTACTCCCATAGACAAGCCCTGCGGAGGCTCTGGTGAAAGCCCTGCTGGTAACAGGGAAGGAACCTCTGGGGAGACAAGTATTCTCACTCCCAGCCCTTGCAAAGCATCAGCACAAGGAAGAGCAGTGTTTGGGAGTGGGCAGCCTCCCCTGTATGAGCACCTTTTTGAGGTTGCGCTACCAAAGACTGCCTACCTCTTTGTTGGCAAGAAGACTGAGGAGCTGCTAAAGAAAGCCAAGGGAACCCAGGATAAAGACTGCATGTCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500-'11-19,'11-18,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=0.842 C2=0.738
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(3.3=100)
A:
PF043887=Hamartin=FE(4.6=100)
C2:
PF043887=Hamartin=FE(26.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGAGGCCTTCACTGTAC
R:
TGGGTCTTCTTCTGAGAACCTGA
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]