MmuEX6100016 @ mm10
Exon Skipping
Gene
ENSMUSG00000026812 | Tsc1
Description
tuberous sclerosis 1 [Source:MGI Symbol;Acc:MGI:1929183]
Coordinates
chr2:28675188-28676558:+
Coord C1 exon
chr2:28675188-28675248
Coord A exon
chr2:28675663-28675767
Coord C2 exon
chr2:28676000-28676558
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTCTCTCTCTGCAGAGG
3' ss Score
13.28
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GAAGAAAGAGCAGATTCCTCAAGGCCTTACCTTCACAGACAGTCAAACGACCGAGGATTAG
Seq A exon
AGGATCCACCTGGAAGCAAAGGTTCCGTTACTCTGAGGAATCTACCTGATTTCCTAGGTGATCTGGCTTCTGAGGAAGACAGTATCGAGAAAGATAAGGAAGAAG
Seq C2 exon
CTGCAATATCTAAAGAGCTTTCTGAGATCACTACTGCAGAGGCGGATCCTGTAGTTCCTCGAGGGGGCTTTGACTCTCCCTTCTACCGAGACAGTCTCTCTGGCTCTCAGCGGAAGACTCATTCGGCAGCCTCTGGGACTCAGGGCTCCAGCGTGAACCCTGAGCCTTTGCACTCCTCCCTGGACAAACATGGGCCTGACACACCAAAGCAAGCCTTTACTCCCATAGACCCACCCTCTGGCAGTGCTGATGTCAGTCCCGCTGGGGACAGGGATCGCCAGACTTCTCTGGAGACCAGTATCCTCACTCCCAGCCCTTGCAAAATCCCACCTCAGAGGGGAGTGAGCTTTGGAAGTGGGCAGCTTCCCCCATATGATCATCTCTTTGAGGTGGCCTTGCCAAAGACTGCCTGTCACTTTGTCAGCAAGAAGACTGAGGAGCTGTTGAAGAAAGTGAAAGGAAACCCTGAGGAAGACTGTGTGCCCTCTACCTCCCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026812_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.988 C2=0.787
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(2.8=100)
A:
PF043887=Hamartin=FE(4.9=100)
C2:
PF043887=Hamartin=FE(26.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGTCAAACGACCGAGG
R:
AAGGCTTGCTTTGGTGTGTCA
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types