RnoEX0094253 @ rn6
Exon Skipping
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7254119-7255531:+
Coord C1 exon
chr3:7254119-7254188
Coord A exon
chr3:7254609-7254713
Coord C2 exon
chr3:7254973-7255531
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTGTCTCTCTGCAGAGG
3' ss Score
12.33
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GAAGAAAGAGCAGATTCTTCAAGGCCTTACCTACCCAGACAGCAGGATGTTCCGAGTGACCGCGGATTAG
Seq A exon
AGGATCTACCTGGAAGCAAAGGTTCCGTCACTCTGAGGAATCTACCAGATTTCCTAGGTGACCTGGCTTCAGAGGAAGACAGTATAGAGAAAGATAAGGAAGAAG
Seq C2 exon
CTGCGATATCTAAAGAGCTTTCTGAGATCACCACTGCAGAGGCGGATCCTGTAGCTCCTCGAGGGGGCTTTGACTCTCCCTTCTACCGAGACAGTCTCTCTGGTTCTCAGCGGAAGACTCACTCAGCAGCCTCTGGGACTCAGGGCTTCAGCGTGAACCCTGAGCCTTTGCACTCCTCCCTGGACAAACATGGGCCTGACACACCAAAGCAAGCCTTTACTCCCATAGACCCACCCTCTGGCAGTGCTGATGCCAGTCCCGCTGGGGACAGGGATCGCCAGACTTCTCTGGAGACCAGTATCCTCACTCCCAGCCCTTGCAAAATTCCACCTCAGAGGGGAGTGAGCTTTGGAAGTGGGCAGCTTCCCCCATATGATCATCTCTTTGAGGTGGCCTTGCCAAAGACTGCCTGTCACTTTGTCAGCAAAAAGACTGAAGAGCTGTTGAAGAAAGCGAAAGGAAACCCTGAGGAAGACTGTGTGCCCTCTACCTCCCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470-'19-21,'19-20,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.824
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(3.2=100)
A:
PF043887=Hamartin=FE(4.9=100)
C2:
PF043887=Hamartin=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGATGTTCCGAGTGAC
R:
AAGGCTTGCTTTGGTGTGTCA
Band lengths:
248-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]