DreEX0086224 @ danRer10
Exon Skipping
Gene
ENSDARG00000052787 | zdhhc12b
Description
zinc finger, DHHC-type containing 12b [Source:ZFIN;Acc:ZDB-GENE-070705-356]
Coordinates
chr5:31220111-31224808:+
Coord C1 exon
chr5:31220111-31220589
Coord A exon
chr5:31222921-31223060
Coord C2 exon
chr5:31224716-31224808
Length
140 bp
Sequences
Splice sites
3' ss Seq
GATGTTCTTCTTGCACACAGACC
3' ss Score
7.91
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGGAAACATGACATGTACCCGTCCTCACATCTAAGCTGCGGAACGGCATCAACAAGCTTATTAGAGCGAAAGAAACACAGAATACTGAAGTACCGCCGTTTCGGTTGAATCACAATGTTATAGCCGTCTCCATTAGGCGTGCAGCATACGAACCCCGACGCCAGGGGACAAATATCCCGGTCAGAAATGGTTGTTGTTGTGGAATTTAGCGCAGGACGCGTAGGAGCGCACTTGACAGCTGGAATGTAACGTTAACTGGTTTCTGATGAGCTCGAGCAGGCTAACAAACACAGCTAGCTGATGATTACAGCTCTTATGACAATGTGTTTCTTTGCGAGTGCACAGCAGACGCATGCTTAGCAGGATATAGAAGTATGCTAGGATGTTCAAAAATGTGTTCGGTTCAGGATTTCTGGTGAGGACCGCTCATGTCATTTTGACATGGGTTATAACGCTGATTCTCTTCCTACACGACACCG
Seq A exon
ACCTGCGCCGGCAGGAGGAGACTGGGGAGCTCACACTGCCGGTTCTCTTTGTGCTGCTGGTTCTGGTGTCTGTGTTGCTGTACTTTGCGGTCTCACTCATGGATCCTGGTTTTGTCCTGACTGATGACTGTGACTTGCAG
Seq C2 exon
TTCACACTTGGTATCGCAGAAGAAACACAGGATATGATTCCACAGACCACCAAATCCATACGACTGCGGCGCTGTGGACACTGTCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052787-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(13.2=46.8)
C2:
PF0152915=zf-DHHC=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCGAGCAGGCTAACAAAC
R:
CCTGTGTTTCTTCTGCGATACCA
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]